Publications

Peer-Reviewed Publications

80. Owen, J.R., Noyes, N., Young, A.E., Prince, D.J., Blanchard, P.C., Lehenbauer, T.W., Aly, S.S., Davis, J.H., O'Rourke, S.M., Abdo, Z., Belk, K., Miller, M.R., Morley, P., Van Eenennaam, A.L. 2017. Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease. G3: Genes, Genomes, Genetics 7:3059-3071. (Link)

79. Van Eenennaam, A.L. and A.E. Young. 2017. Detection of dietary DNA, protein, and glyphosate in meat, milk, and eggs. Journal of Animal Science 95(7):3247-3269. (Link)

78. Welly, B.T., Miller, M.R., Stott, J.L., Blanchard, M.T., Islas-Trejo, A.D., O’Rourke, S.M., Young, A.E., Medrano, J.F., Van Eenennaam, A.L. 2017. Identification of antigenic proteins from the etiologic agent of epizootic bovine abortion using de novo assembly, reverse vaccinology and immunological validation of candidate proteins. G3: Genes, Genomes, Genetics. 7(2):321-331. (Link)

77. Van Eenennaam, A.L. 2017. Genetic Modification of Food Animals. Current Opinion in Biotechnology 44:27-34. (Link)

76. Buchanan, J.W., James, S.T., Marquess, F.L., Woronuk, G.N., Deobald, H., Welly, B.T., Van Eenennaam, A.L. 2016. Analysis of validated and population specific SNP parentage panels in pedigreed and commercial beef cattle populations. Canadian Journal of Animal Science. 97:231-240. (Link)

75. Buchanan, J.W., MacNeil, M.D., Raymond, R.C., McClain, A.R., Van Eenennaam, A.L. 2016. Variance component estimates for Charolais-sired fed cattle and relative economic impact of bovine respiratory disease. Journal of Animal Science. 94:1-6. (Link)

74. Petracca,Y., Van Eenennaam, A.L., Lema, M.A. 2016. Gene Editing: Do not forget about Animal Agriculture. Journal of Advanced Research in Biotechnology. 1(1):1-2. (Link)

73. Carroll, D., Van Eenennaam, A.L., Taylor, J.F., Seger, J., Voytas, D.F. 2016. Regulate genome-edited products, not genome editing itself. Nature Biotechnology 34(5): 477-479. (Link)

72. Weber,K.L., Welly, B.T., Van Eenennaam, A.L., Young, A.E., Porto-Neto, L.R., Reverter, A., Rincon, G. 2016. Identification of Gene Networks for Residual Feed Intake in Angus Cattle Using Genomic Prediction and RNA-seq. PLoS One 11(3): e0152274. (Link)

71. Love, W.J., Lehenbauer, T.W., Van Eenennaam, A.L., Drake, C.M., Kass, P.H., Farver, T.B., Aly, S.S. 2016. Sensitivity and Specificity of On-Farm Scoring Systems and Nasal Culture to Detect Bovine Respiratory Disease Complex in Pre-weaned Dairy Calves. Journal of Veterinary Diagnostic Investigation 28(2): 119-128. (Link)

70. Love, W.J., Lehenbauer, T.W., Karle, B.M., Hulbert, L.E., Anderson, R.J., Van Eenennaam, A.L., Farver, T.B., Aly, S.S. 2016. Survey of management practices related to bovine respiratory disease in preweaned calves on California dairies. J Dairy Sci 99(2):1483-94. (Link)

69. Love, W.J., Lehenbauer, T.W., Van Eenennaam, A.L., Drake, C.M., Kass, P.H., Farver, T.B., Aly, S.S. 2016. Sensitivity and specificity of on-farm scoring systems and nasal culture to detect bovine respiratory disease complex in preweaned dairy calves. J Vet Diagn Invest 28(2):119-28. (Link)

68. Van Eenennaam, A. and A.E. Young. 2015. Animal agriculture and the importance of agnostic governance of biotechnology. Agriculture and Food Security 4: 21. (Link)

67. Gershwin, L.J., Van Eenennaam, A.L., Anderson, M.L., McEligot, H.A., Shao, M.X., Toaff-Rosenstein, R., Taylor, J.F., Neibergs, H.L. 2015. Single pathogen challenge with agents of the Bovine Respiratory Disease Complex. PLoS One 10(11): e0142479. (Link)

66. Tizioto, P., Kim, J., Seabury, C., Schnabel, R., Gerswhin, L., Van Eenennaam, A, Toaff-Rosenstein, R., Neibergs, H., Taylor, J., 2015. Immunological response to single pathogen challenge with agents of the Bovine Respiratory Disease Complex. An RNA-sequence analysis of the bronchial lymph node transcriptome. PLoS One 10(6): e0131459. (Link)

65. Ng, T.F., Kondov, N.O., Deng, X., Van Eenennaam, A., Neibergs, H.L., Delwart, E. 2015. A metagenomics and case-control study to identify viruses associated with bovine respiratory disease. Journal of Virology 89(10): 5340-9. (Link)

64. Young, A.E. and A.L. Van Eenennaam. 2015. Genetically Modified Organisms, Animals. MacMillan’s Reference Discoveries in Modern Science: Exploration, Invention, Technology. 419-425. (Link)

63. Neibergs, H.L., Seabury, C.M., Wojtowicz, A.J., Wang, Z., Scraggs, E., Kiser, J., Neupane, M., Womack, J.E., Van Eenennaam, A.L., Hagevoort, G.R., Lehenbauer, T.W., Aly, S.S., Davis, J., Taylor, J.F. 2014. Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned Holstein calves. BMC Genomics. 2014 Dec 22: 15(1):1164. (Link)

62. Van Eenennaam, A.L., and A.E. Young. 2014. Prevalence and impacts of genetically engineered feedstuffs on livestock populations. Journal of Animal Science. 2014 Oct; 92(10): 4255-78. (Link)

61. Van Eenennaam, A.L., K.L. Weber, and D.J. Drake. 2014. Evaluation of bull prolificacy on commercial beef cattle ranches using DNA paternity analysis. Journal of Animal Science. 92(6): 2693-2701. (Link)

60. Van Eenennaam, A.L., K.A. Weigel, A.E. Young, M.A. Cleveland and J.C.M. Dekkers. 2014. Applied Animal Genomics: Results from the Field. Annual Review of Animal Biosciences. Volume 2: 105-139. (Link)

59. Love, W.J., Lehenbauer, T.W, Kass, P.H., Van Eenennaam, A.L., and S.S. Aly. 2014. Development of a novel clinical scoring system for on-farm diagnosis of bovine respiratory disease in pre-weaned dairy calves. PeerJ 2:e238. (Link)

58. Van Eenennaam, A.L., Muir, W.M. and E. A. Hallerman. 2013 (Invited Paper) Is Unaccountable Regulatory Delay and Political Interference Undermining the FDA and Hurting American Competitiveness?: A Response to Tim Schwab’s ‘Is FDA Ready to Regulate the World’s First Biotech Food Animal’? The Food and Drug Law Institute (FDLI) Food and Drug Policy Forum. Volume 3 (12) July 10, 2013. (Link)

57. McClure, M.C., Sonstegard, T.S., Wiggans, G.R., Van Eenennaam, A. L. , Weber, K.L.,Torres Penedo, M.C.,  Berry, D., Flynn, J., Garcia, J.F., Santana Carmo, A., Regitano, L.C.A., Albuquerque, M., Silva, M.V.G.B.,  Machado,  M. A., Coffey, M., Moore, K., Boscher, M.Y., Genestout, L., Mazza, R., Taylor, J.F., Schnabel, R.D.,  Simpson, B., Marques, E., McEwan, J., Cromie, A., Lehmann Coutinho, L., Kuehn, L., Keele, J., Piper, E., Cook, J., Williams, R., and C. Van Tassell. 2013. "Imputation of Microsatellite Alleles from Dense SNP Genotypes for Parentage Verification Across Multiple Bos taurus and Bos indicus breeds"  Frontiers in Livestock Genomics. Frontiers in Livestock Genomics. 4(176) 1-11. (Link)

56. Van Eenennaam, A.L. 2013. (Invited Paper) GMOs in Animal Agriculture: Time to Include a Risk:Benefit Analysis in Regulatory Decisions. Journal of Animal Science and Biotechnology. 4:37. (Link)

55. Van Eenennaam, A.L. K.L. Weber and D.J. Drake. 2013. The California Commercial Ranch Project. Association for the Advancement of Animal Breeding and Genetics. 20:10-13. (Link)

54. Van Eenennaam, A.L. 2013. (Invited Chapter)  Considerations related to breed and biological type. Chapter 3 in Heifer development in beef cattle.  D. J. Patterson and M. F. Smith Eds. Veterinary Clinics of North America: Food Animal Practice. 29(3):493-516. (Link)

53. Mateescu, R.G., Garrick, D.J., Tait, Jr., R.G., Garmyn, A.J., Duan, Q., Liu, Q., Mayes, M.S., Van Eenennaam, A.L., VanOverbeke, D.L., Hilton, G.G., Beitz, D.C., and J. M. Reecy. 2013. Genome-wide association study of concentrations of iron and other minerals in longissimus muscle of Angus cattle. J. Anim. Sci. 91:3593-3600 (Link)

52. Van Eenennaam, A.L. 2013. Animal Biotechnology: scientific, regulatory and public acceptance issues associated with cloned and genetically engineered animals. Animal Genetics eTextbook. Wily-Blackwell. (In press).

51. Van Eenennaam, A.L. 2013. Genetics and sustainable animal agriculture. Chapter 3 in “Sustainable Animal Agriculture" CABI Publishing. (Link)

50. Weber, K. L., D.J. Drake, J. F. Taylor, D.J. Garrick, L.A. Kuehn, R.M. Thallman, R.D. Schnabel, W.M. Snelling, E.J. Pollak, A.L. Van Eenennaam. 2012. The accuracies of DNA-based genetic merit prediction equations derived from Angus- and multi-breed beef cattle training populations. Journal of Animal Science. 90:4177-4190. (Link)

49. Weber, K. L., R. M. Thallman, J. W. Keele, W. M. Snelling, G. L. Bennett, T. P. L. Smith, T. G. McDaneld, M. F. Allan, A. L. Van Eenennaam, and L. A. Kuehn. 2012.  Accuracy of genomic breeding values in multi-breed beef cattle populations derived from deregressed breeding values and phenotypes. Journal of Animal Science. 90:4191-4202. (Link)

48. Mateescu RG, Garmyn AJ, O'Neil MA, Tait RG Jr, Abuzaid A, Mayes MS, Garrick DJ, Van Eenennaam AL, Vanoverbeke DL, Hilton GG, Beitz DC, Reecy JM. 2012. Genetic parameters for carnitine, creatine, creatinine, carnosine, and anserine concentration in longissimus muscle and their association with palatability traits in Angus cattle.  Journal of Animal Science. 90:4248-4255. (Link)

47. Van Eenennaam, A. L., and D. J. Drake. 2012. Where in the beef cattle supply chain might DNA tests generate value? Livestock Production Science. 52(3) 185-196. (Link)

46. Van Eenennaam, A.L. and W.M. Muir. 2012. Animal biotechnologies and agricultural sustainability. Chapter 6 in “The Role of Biotechnology in a Sustainable Food Supply.” Cambridge University Press. (Link)

45. Duan, Q., R. G. Tait Jr, M.S. Mayes, D J. Garrick, Q. Liu, A.L. Van Eenennaam, R.G. Mateescu, D.L.Van Overbeke, A.J. Garmyn, D.C. Beitz, and J.M. Reecy. 2012. Genetic polymorphisms in bovine transferrin receptor 2 (TFR2) and solute carrier family 40 (iron-regulated transporter), member 1 (SLC40A1) genes and their association with beef iron content. Animal Genetics. 4:115-22. (Link)

44. Rincon, G., K.L. Weber, A.L. Van Eenennaam, B.L. Golden, and J.F. Medrano. 2011. Performance of bovine high density genotyping platforms in Holsteins and Jerseys. Journal of Dairy Science. 94: 6116–6121. (Link)

43. Van Eenennaam, A.L. and W.M. Muir. 2011. Transgenic salmon: a final leap to the grocery shelf? Nature Biotechnology. 29: 706–710. (Link)

42. Van Eenennaam, A. L. 2011. Beef translational genomics: Lessons from the literature. Association for the Advancement of Animal Breeding and Genetics. 19: 271-278. (Link)

41. Cooprider, K. L., F. M. Mitloehner, T. R. Famula, E. Kebreab, Y. Zhao, and A. L. Van Eenennaam. 2011. Feedlot efficiency implications on greenhouse gas emissions and sustainability. Journal of Animal Science. 89:2643-56. (Link)

40. Van Eenennaam, A. L., E. M. Hallerman, and W.M. Muir. 2011. The Science and Regulation of Food from Genetically Engineered Animals. Council for Agricultural Science and Technology (CAST) Commentary QTA2011-2. CAST, Ames, Iowa. (Link)

39. Van Eenennaam, A. L., J.H. van der Werf, and M.E. Goddard. 2011. The value of using DNA markers for beef bull selection in the seedstock sector. Journal of Animal Science. 89:307-320. (Link)

38. Wong, A.C., and A. L. Van Eenennaam. 2011. FLPe functions in zebrafish embryos. Transgenic Research. 20:409–415. (Link)

37. Pohlmeier, W., R. C. Hovey, and A. L. Van Eenennaam. 2011. Reproductive abnormalities in mice expressing omega-3 fatty acid desaturase in their mammary glands. Transgenic Research. 20:283-92. (Link)

36. Hagopian,K., K. L. Weber, D. T. Hwee, A. L. Van Eenennaam, G. López-Lluch,  J. M. Villalba, I. Burón, P. Navas, J. B. German, S. M. Watkins, K. A. Simmons Domer, Y. Chen, A. Wei, R. B. McDonald, and J. J. Ramsey. 2010. Complex I hydrogen peroxide production is decreased and electron transport chain enzymes activities are altered in n-3 enriched fat-1 mice. PLoS ONE. 5(9):e12696. (Link)

35. Fahrenkrug, S. C.,  A. Blake, D. F. Carlson, T. Doran, A. L. Van Eenennaam, D. Faber, C. Galli, P. B. Hackett, N. Li, E. A. Maga, J. D. Murray, R. Stotish, E. Sullivan, J. F. Taylor, M. Walton, M. Wheeler, B. Whitelaw, B. P.  Glenn. 2010. Precision Genetics for Complex Objectives in Animal Agriculture.  Journal of Animal Science. 88:2530-2539. (Link)

34. Van Eenennaam, A. L., K. L. Weber, K. Cooprider, and D. J. Drake. 2010. Development and implementation of a vertically-integrated beef cattle data collection system. California Agriculture. 64: 94-100. (Link)

33. Van Eenennaam, A. L., and J. F. Medrano. 2008. Manipulation of Milk Fat Composition Through Transgenesis, pages 343-354 in “Bioactive Components in Milk”, Volume 606 of Advances in Experimental Medicine and Biology. Edited by Z. Bösze. Springer. 483 pp.

32. W. Pohlmeier, and A. L. Van Eenennaam. 2008. Animal Biotechnology. 30 minute UC ANR peer-reviewed video.  (Link)

31. Wong, A. C., and A. L. Van Eenennaam. 2008. Transgenic Approaches for the Reproductive Containment of Genetically Engineered Fish. Aquaculture. 2751-12. (Link)

30. Van Eenennaam, A. L., R. L. Weaber, D. J. Drake, M. C. T. Penedo, R. L. Quaas , D. J. Garrick, E. J. Pollak. 2007. DNA-based paternity analysis and genetic evaluation in a large commercial cattle ranch setting.  Journal of Animal Science.  853159–3169. (Link)

29. Van Eenennaam, A. L., J. Li, R. M. Thallman, R. L. Quaas, M. E. Dikeman, C. A. Gill, D. E. Franke, M. G. Thomas. 2007. Validation of commercial DNA tests for quantitative beef quality traits. Journal of Animal Science. 85891-900. (Link)

28. Van Eenennaam, A. L., and P. G. Lemaux 2007. Cornucopia’s Challenge. 30 minute UC ANR peer-reviewed video. University of California, Division of Agriculture and Natural Resources. 6587V (VHS) or 6587D (DVD).

27. K. D. Bongiovanni, E. J. DePeters, and A. L. Van Eenennaam. 2007. Neonatal Growth and Development of Mice Raised on Milk Transgenically-Enriched with Omega-3 Fatty Acids.  Pediatric Research. 62(4): 412-6. (Link)

26. Kao, B. T., E. J. DePeters, and A. L. Van Eenennaam. 2006. Mice Raised on Milk Transgenically-Enriched with n-3 PUFA have Increased Brain Docosahexaenoic Acid. Lipids. 41(6): 543-9. (Link)

25. Kao, B. T., K. A. Lewis, E. J. DePeters, and A. L. Van Eenennaam. 2006. Endogenous Production and Elevated Levels of Long-Chain n-3 Fatty Acids in the Milk of Transgenic Mice. Journal of Dairy Science. 89(8): 3195-3201. (Link)

24. Van Eenennaam, A. L. and P. G. Olin. 2006. Genetically engineered fish. California Agriculture. 60(3) 126-131. (Link)

23. Van Eenennaam, A. L. 2006. What is the future of animal biotechnology?  California Agriculture. 60(3) 132-139. (Link)

22. Van Eenennaam, A. L. 2006. “DNA-Based Biotechnologies” Chapter in the National Beef Cattle Evaluation Consortium (NBCEC) Beef Sire Selection Manual. Pages 66-73. (Link)

21. Van Eenennaam, A.L. 2005. Genetic Engineering and Fish. UC ANR, Agricultural Biotechnology in California Series, Publication # 8185.

20. Van Eenennaam, A.L. 2005. Genetic Engineering and Animal Agriculture.  UC ANR, Agricultural Biotech in California Series, Publication # 8184.

19. Van Eenennaam, A.L. 2005. Genetic Engineering and Animal Feed.  UC ANR, Agricultural Biotechnology in California Series, Publication # 8183.

18. Morimoto, K. C., A. L. Van Eenennaam, E. J. DePeters, and J. F. Medrano. 2005. Hot Topic Endogenous Production of Omega-3 and Omega-6 Fatty Acids in Mammalian Cells. Journal of Dairy Science. 88(3) 88(3) 1142-1146. (Link)

17. Wong, A.C., and A.L. Van Eenennaam. 2004. Gonadotropin hormone and receptor sequences from model teleost species. Zebrafish. 1(3)203-221. (Link)

16. Van Deynze, A. Van Eenennaam, A.L. and Bradford, K.J. 2004. Crop Biotechnology Feeds for Livestock.  UC ANR, Agricultural Biotechnology in California Series, Publication # 8145.

15.  Van Eenennaam, A. L. 2004. Genetic Engineering in California Agriculture. 30 minute UC ANR peer-reviewed video. ANRUCTV 04-06. 6502V (Link)

14. Van Eenennaam, A. L. 2004. DNA-based Marker-Assisted Selection in Beef Cattle. CL1043 in “Cow-Calf Management Guide & Cattle Producer’s Library”. University of Idaho, Moscow.

13. Van Eenennaam, A. L., G. Li, M. Venkatramesh, C. Levering, X. Gong, A. C. Jamieson, C. K. Shewmaker, and C. C. Case. 2004. Elevation of seed a-tocopherol levels using plant-based transcription factors targeted to an endogenous locus. Metabolic Engineering. 6(2)101-8. (Link)

12. Van Eenennaam, A. L., et al. 2003. Engineering vitamin E content from Arabidopsis mutant to soy oil. Plant Cell. 15 3007-3019. (Link)

11. Van Eenennaam, A. L., J. D. Murray, and J. F. Medrano. 1999. Karyotype of the American green sturgeon. Transactions of the American Fisheries Society 128 175-177. (Link)

10. Van Eenennaam, A. L., Van Eenennaam, J.P., Medrano, J.F., and Doroshov, S.I. 1999. Evidence of female heterogametic genetic sex determination in white sturgeon. Journal of Heredity 90 231-233. (Link)

9. Van Eenennaam, A. L., J. D. Murray, and J. F. Medrano. 1998. Mitotic analysis of the North American white sturgeon, Acipenser transmontanus Richardson (Pisces, Acipenseridae), a fish with a very high chromosome number. Genome 41 266-271. (Link)

8. Van Eenennaam, A. L., J. D. Murray, and J. F. Medrano. 1998. Synaptonemal complex analysis in spermatocytes of white sturgeon, Acipenser transmontanus Richardson (Pisces, Acipenseridae), a fish with a very high chromosome number. Genome 41 51-61. (Link)

7. Van Eenennaam, A. L., J. P. Van Eenennaam, J. F. Medrano, and S. I. Doroshov. 1996. Rapid verification of meiotic gynogenesis and polyploidy in white sturgeon (Acipenser transmontanus Richardson). Aquaculture 147 177-189. (Link)

6. Van Eenennaam, A. L., et al. 1995. Financial analysis of alternative treatments for clinical mastitis associated with environmental pathogens. Journal of Dairy Science 78 2086‑2095. (Link)

5. Cullor, J. S., A. L. Van Eenennaam, et al. 1994. Performance of various tests used to screen antibiotic residues in milk samples from individual animals. J. AOAC Int. 77 862-870. (Link)

4. Guterbock, W. M., A. L. Van Eenennaam, R. J. Anderson, I. A. Gardner, J. S. Cullor, and C. A. Holmberg. 1993. Efficacy of intramammary antibiotic therapy for treatment of clinical mastitis caused by environmental pathogens. Journal of Dairy Science 76 3437-3444. (Link)

3. Van Eenennaam, A. L., J. S. Cullor, L. Perani, I. A. Gardner, W. L. Smith, J. Dellinger, W. M. Guterbock, and L. Jensen. 1993. Evaluation of milk antibiotic residue screening tests in cattle with naturally occurring clinical mastitis. Journal of Dairy Science 76 3041-3053. (Link)

2. Van Eenennaam, A. L., and J. F. Medrano. 1991. Milk protein polymorphisms in the California dairy cattle population. Journal of Dairy Science 74 1730-1742. (Link)

1. Van Eenennaam, A. L., and J. F. Medrano. 1991. Differences in allelic protein expression in the milk of heterozygous K-casein cows. Journal of Dairy Science 74 1491-1496. (Link)